miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|46517681|gb|BJ676917.1|BJ676917 GCTCACCTGATAACCGACGCGCTCTAGCTTGAAGAGAAATATCAACTTCCAGAAATACTTTTTTAAGTATTTATTTATTT
ATTTTTTACATTATTTATTTTTTTAAATTTCCTGTGATCATTCACCCAGGATTTTATACAAATGGATGCGCTGTGGGTCC
GCTGTGTTTTCCTCCTGGCATGTTGCTGTGCATCAGGACTCGGCAGCGCAAACAAATGCGACGAAGTGCGCAAAGTTTTC
CAACTCAGACAAATCGGACCAAGTCACTTATTGCCTTCAAATCCAAGACCAGGTTCAGACCTTCAGGTGTGTGTTTCCAA
GAACTCCACATGCTGCACCAAAAAGATGGAGGAGAGGTACCAGGTGGCAGCCCGGAGAGACATCCAGAACCTTCTCCANA
CGTCCAGCTCCAGCCTGAAGTTTCTCATAGCGCGCAACGTGGCCGCTTTTCAAGAGTCCTTCGAGGCCTTGTTGTGGCAG
GCGGAGAATTACACCATCACCCTCTTCCAGGATTTGTACCACAGCATGGCTGATCAGGCTGCGGGTCCCGTGCGGGAACT
CTTCACTGACATCAGCCTCTTCCTGCTGGGCTCTGAGTTCAGCGTCGATGAGTTAGTGCAGCGCTTCT




Most similar to sp|P78333|GPC5_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P78333|GPC5_HUMAN Glypican-5 OS=Homo sapiens GN=GPC5 PE=1 SV=1
          Length = 572

 Score =  154 bits (388), Expect = 6e-37
 Identities = 77/156 (49%), Positives = 101/156 (64%)
 Frame = +1

Query: 160 RCVFLLACCCASGLGSANKCDEVRKVFQLRQIGPSHLLPSNPRPGSDLQVCVSKNSTCCT 339
           RC+ LLA   ++       C+EVRK+FQ R +G    LP +PR G DLQVC+SK  TCCT
Sbjct: 11  RCLLLLALVGSARSEGVQTCEEVRKLFQWRLLGAVRGLPDSPRAGPDLQVCISKKPTCCT 70

Query: 340 KKMEERYQVAARRDIQNXXXXXXXXXXXXIARNVAAFQESFEALLWQAENYTITLFQDLY 519
           +KMEERYQ+AAR+D+Q             I+RN AAFQE+ E L+ QAENYT  LF   Y
Sbjct: 71  RKMEERYQIAARQDMQQFLQTSSSTLKFLISRNAAAFQETLETLIKQAENYTSILFCSTY 130

Query: 520 HSMADQAAGPVRELFTDISLFLLGSEFSVDELVQRF 627
            +MA +AA  V+E FTD+ L+L G++ + +E V RF
Sbjct: 131 RNMALEAAASVQEFFTDVGLYLFGADVNPEEFVNRF 166